PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000781-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 471aa    MW: 52783.1 Da    PI: 4.5699
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000781-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-331372272101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk++e++ed+++++++swse+ +sf v+de+ fa+++Lp+yFk +nf+SF+RQLn+YgFkk+++++         w+F+++ F++gkk+
  WALNUT_00000781-RA 137 FLKKIFEMVEDPDTDRVVSWSETRDSFTVWDEHVFAQDLLPRYFKNRNFSSFIRQLNTYGFKKIDTDN---------WKFANEGFQRGKKH 218
                         9*****************************************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++ikr++
  WALNUT_00000781-RA 219 LLKSIKRRS 227
                         *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.07E-32133226IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-52133226IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.2E-36133226IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.4E-30137226IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-17137160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-17175187IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-17188200IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MVTETKGCRT FSSLPMKQLV HVKQEEEETR TTPSDDIPPN SGCAPDDGLS YSSSATAIRT  60
PVHEINDTAP PTTTKTSEVD DIDMVYIKEE EEEEEDENRD VASFDCDGGG NGPSSSSSSA  120
AVPKPMEGLH EPGPPPFLKK IFEMVEDPDT DRVVSWSETR DSFTVWDEHV FAQDLLPRYF  180
KNRNFSSFIR QLNTYGFKKI DTDNWKFANE GFQRGKKHLL KSIKRRSLLN KQQQQEGAVG  240
VNPMKPWLED ELESLKEDQN VLKVEILNLR QKQEDSQNQL GAAENRIRGA ECRIQQMLFF  300
LTKVTKGPSF VQQLIQKTKQ QKRELDGEEF VKRRRLLASH VREKAIDKIH RINSRNQVPG  360
GLVTTLSGLS EILEEDAVDM DIPASIDVAL CSLEDQNINV MSRRSSSPNI SSVYDVMSEK  420
LLEDNLIVDE ELAVNDSKFY SELEDLIVKP GDCGGVAGGL VEQAGCVGAL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2313522627129Heat shock factor protein 1
5d5v_B3e-2313522627129Heat shock factor protein 1
5d5v_D3e-2313522627129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219225LKSIKRR
2331335KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309214.21e-126hypothetical protein POPTR_0006s15050g
TrEMBLB9HDY21e-126B9HDY2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15050.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-75heat shock transcription factor A2